Publication研究業績

  1. トップページ
  2. 研究業績
  1. 投稿論文
  2. 総説・解説文
  3. 著書
  4. 受賞

投稿論文

2025
  1. H Habe*, T Aoyagi, T Hori, T Inaba, Y Sato, T Yasutaka. Distinctive microbial communities linked with pH and heavy metals in mine drainages across all regions of Japan. Sci Total Environ. 975, 179222. 2025
  2. Y Sato, T Hamai*, Y Masaki, H Aoki, H Habe*. Comparison of operating conditions and microbial compositions in an ethanol-fed sulfate-reducing bioreactor for the treatment of acid mine drainage. Mine Water Environ. 44, 122–132. 2025
2024
  1. Y Sato*. Transcriptome analysis: a powerful tool to understand individual microbial behaviors and interactions in ecosystems. Biosci Biotechnol Biochem. 88, 850–856. 2024
  2. Y Sato†, K Hasemi†, K Machikawa†, H Kinjo, N Yashiro, Y Iimura, H Aoki, H Habe*. Assessing microbial stability and predicting biogas production in full-scale thermophilic dry methane fermentation of municipal solid waste. Bioresour Technol. 402, 130766. 2024
  3. Y Sato, T Hamai*, Y Masaki, T Aoyagi, T Inaba, T Hori, H Habe*. Replacing rice bran with low-molecular-weight substrates affected the performance and metabolic feature of sulfate-reducing bioreactors treating acid mine drainage. J Environ Chem Eng. 12, 112118. 2024
  4. N Miyata*, R Suganuma, K Sunouchi, K Okano, S Fuchida, M Watanabe, M Fujibayashi, Y Sato, C Tokoro. Biological Mn (II) oxidation under organic substrate-limited conditions and its application in mine drainage remediation. Biochem Eng J. 203, 109187. 2024
  5. H Habe*†, T Inaba†, T Aoyagi, H Aizawa, Y Sato, T Hori, K Yamaji, Y Ohara, K Fukuyama, T Nishimura (†equal contribution). Microbial community analysis of sand filters used to treat mine water from a closed uranium mine. J Gen Appl Microbiol. 70, 170–177. 2024
2023
  1. T Inaba, H Aizawa, T Aoyagi, Y Sato, T Hori, T Nishimura*, H Habe*. Startup performance and microbial composition of a pilot-scale rapid sand filter for the treatment of manganese-containing mine water. Chemosphere. 343, 140229. 2023
  2. K Kuroda*, S Tomita, H Kurashita, M Hatamoto, T Yamaguchi, T Hori, T Aoyagi, Y Sato, T Inaba, H Habe, H Tamaki, Y Hagihara, T Tamura, T Narihiro*. Metabolic implications for predatory and parasitic bacterial lineages in activated sludge wastewater treatment systems Water Res X. 20, 100196. 2023
  3. Y Sato, T Hamai*, T Hori, T Aoyagi, T Inaba, H Habe*. Biofilm microbiomes present in pilot-and laboratory-scale sulfate-reducing bioreactors for acid mine drainage treatment. J Environ Biotechnol. 23, 53–62. 2023
  4. Y Sato*†, T Miwa†, T Inaba†, T Akachi, E Tanaka, T Hori, K Murofushi, H Takagi, H Futamata, T Aoyagi, H Habe* Microbially produced fertilizer provides rhizobacteria to hydroponic tomato roots by forming beneficial biofilms. Appl Microbiol Biotechnol. 107, 7365–7374. 2023
  5. K Nouzaki, R Tanaka, Y Sato, T Inaba, T Aoyagi, T Hori, H Yanagishita, H Habe. Evaluating the optimal oil concentrations in the startup performance of a membrane bioreactor treating oily noodle-soup wastewater. J Oleo Sci. 72, 357–367. 2022
2022
  1. JA Schwartzman, A Ebrahimi, G Chadwick, Y Sato, BRK Roller, VJ Orphan, OX Cordero. Bacterial growth in multicellular aggregates leads to the emergence of complex life cycles. Curr Biol. 32, 3059-3069. 2022
  2. T Inaba, T Goto, T Aoyagi, T Hori, K Aoki, Y Sato, N Ono, T Furihata, H Habe, S Ogino, A Ogata. Biological treatment of ironworks wastewater with high-concentration nitrate using a nitrogen gas aerated anaerobic membrane bioreactor. J Chem Eng. 450, 138366. 2022
  3. Y Sato, T Hamai, T Hori, T Aoyagi, T Inaba, K Hayashi, M Kobayashi, T Sakata, H Habe. Optimal start-up conditions for the efficient treatment of acid mine drainage using sulfate-reducing bioreactors based on physicochemical and microbiome analyses. J Hazar Mater. 423, 127089. 2022
  4. T Inaba, M Yamaguchi, A Taniguchi, Y Sato, T Aoyagi, T Hori, H Inoue, M Fujita, M Iwata, Y Iwata, H Habe. Evaluation of dye decolorization using anaerobic granular sludge from an expanded granular sludge bed based on spectrometric and microbiome analyses. J Gen Appl Microbiol. 68, 242–247. 2022
2021
  1. Y Sato, S Jang, K Takeshita, H Itoh, H Koike, K Tago, M Hayatsu, T Hori, Y Kikuchi. Insecticide resistance by a host-symbiont reciprocal detoxification. Nat Commun. 12, 6432. 2021
  2. H Habe, Y Sato, H Tani, M Matsutani, K Tanioka, G Theeragool, K Matsushita, T Yakushi. Heterologous expression of membrane-bound alcohol dehydrogenase–encoding genes for glyceric acid production using Gluconobacter sp. CHM43 and its derivatives. Appl Microbiol Biotechnol. 105, 6749–6758. 2022
  3. M Mahmood, S Taki, S Nakai, T Gotoh, W Nishijima, A Umehara, T Aoyagi, Y Sato, T Hori, Y Katayama, R Hajdu-Rahkama, JA Puhakka. Increase in sedimentary organic carbon with a change from hypoxic to oxic conditions. Mar Pollut Bull. 168 112397. 2021
  4. S Pollak, M Gralka, Y Sato, J Schwartzman, L Lu, OX Cordero. Public good exploitation in natural bacterioplankton communities. Sci Adv. 7, eabi4717. 2021
  5. Y Iimura, H Abe, Y Otsuka, Y Sato, H Habe. Bacterial community coexisting with white-rot fungi in decayed wood in nature Curr Microbiol. 78, 3212–3217. 2021
  6. Y Sato*†, E Tanaka†, T Hori†, H Futamata, K Murofushi, H Takagi, T Akachi, T Miwa, T Inaba, T Aoyagi, H Habe. Efficient conversion of organic nitrogenous wastewater to nitrate solution driven by comammox Nitrospira. Water Res. 197, 117088. 2021
  7. H Habe, Y Sato, T Taira, T Imura. Enrichment and isolation of surfactin-degrading bacteria. J Oleo Sci. ess20331. 2021
  8. Y Arai, H Koike, S Sato, Y Sato, Y Iimura, H Tani, T Yakushi, K Matsushita, H Fuse, H Habe. Detection of gene mutations possibly related to methanol tolerance in Gluconobacter frateurii mutant Gf398. J Environ Biotechnol. 21, 59–62. 2021
2020
  1. T Aoyagi, Y Mori, M Nanao, Y Matsuyama, Y Sato, T Inaba, H Aizawa, T Hayakawa, M Moriya, Y Higo, H Habe, T Hori. Effective Se reduction by lactate-stimulated indigenous microbial communities in excavated waste rocks. J Hazard Mater. 403, 123908. 2021
  2. H Habe, Y Sato, K Kirimura. Microbial and enzymatic conversion of levulinic acid, an alternative building block to fermentable sugars from cellulosic biomass. Appl Microbiol Biotechnol. 104, 7767–7775. 2020
  3. H Habe, Y Sato, T Aoyagi, T Inaba, T Hori, T Hamai, K Hayashi, M Kobayashi, T Sakata, N Sato. Design, application, and microbiome of sulfate-reducing bioreactors for treatment of mining-influenced water. Appl Microbiol Biotechnol. 104, 6893–6903. 2020
  4. T Inaba, T Su, T Aoyagi, H Aizawa, Y Sato, C Suh, JH Lee, T Hori, A Ogata, H Habe. Microbial community in an anaerobic membrane bioreactor and its performance in treating organic solid waste under controlled and deteriorated conditions. J Environ Manage. 269, 110786. 2020
  5. T Aoyagi, T Inaba, H Aizawa, D Mayumi, S Sakata, A Charfi, C Suh, JH Lee, Y Sato, A Ogata, H Habe, T Hori. Unexpected diversity of acetate degraders in anaerobic membrane bioreactor treating organic solid waste revealed by high-sensitivity stable isotope probing. Water Research. 176, 115750. 2020
  6. T Inaba, T Aoyagi, T Hori, A Charfi, C Suh, JH Lee, Y Sato, A Ogata, H Aizawa, H Habe. Clarifying prokaryotic and eukaryotic biofilm microbiomes in anaerobic membrane bioreactor by non-destructive microscopy and high-throughput sequencing. Chemosphere. 254, 126810. 2020
  7. R Tanaka, K Nouzaki, RR Navarro, T Inaba, T Aoyagi, Y Sato, A Ogata, H Yanagishita, T Hori, H Habe. Activated sludge microbiome in a membrane bioreactor for treating Ramen noodle-soup wastewater. The Journal of General and Applied Microbiology. 66, 339–343. 2021
  8. Y Guo, T Aoyagi, T Inaba, Y Sato, H Habe, T Hori. Complete Genome Sequence of Desulfuromonas sp. Strain AOP6, an Iron (III) Reducer Isolated from Subseafloor Sediment. Microbiol Resour Announc. 9, e01325-19. 2020
  9. Y Sato*†, YJ Zhao†, T Hori, T Aoyagi, T Inaba, H Aizawa, A Ogata, H Habe. Transition of microbial community structures after development of membrane fouling in membrane bioreactors (MBRs). AMB Express. 10, 18. 2020
  10. T Inaba, T Aoyagi, T Hori, A Charfi, C Suh, JH Lee, Y Sato, A Ogata, H Aizawa, H Habe. Long-term acclimatization of sludge microbiome for treatment of high-strength organic solid waste in anaerobic membrane bioreactor. Biochem Eng J. 154, 107461. 2020
2019
  1. H Habe, H Koike, Y Sato, Y Iimura, T Hori, M Kanno, N Kimura, K Kirimura. Identification and characterization of levulinyl-CoA synthetase from Pseudomonas citronellolis, which differs phylogenetically from LvaE of Pseudomonas putida. AMB Express. 9, 127. 2019
  2. H Habe, T Taira, Y Sato, T Imura, T Ano. Evaluation of Yield and Surface Tension-lowering Activity of Iturin A Produced by Bacillus subtilis RB14. J oleo sci. 68, 1157–1162. 2019
  3. Y Sato, T Hamai, T Hori, T Aoyagi, T Inaba, M Kobayashi, H Habe, T Sakata. Desulfosporosinus spp. were the most predominant sulfate-reducing bacteria in pilot- and laboratory-scale passive bioreactors for acid mine drainage treatment. Appl Microbiol Biotechnol. 103, 7783–7793. 2019
  4. Y Sato, T Hori, H Koike, RR Navarro, A Ogata, H Habe. Transcriptome analysis of activated sludge microbiomes reveals an unexpected role of minority nitrifiers in carbon metabolism. Commun Biol. 2, 179. 2019
  5. TH Nguyen, F Ishizuna, Y Sato, H Arai, M Ishii. Physiological characterization of poly-β-hydroxybutyrate accumulation in the moderately thermophilic hydrogen-oxidizing bacterium Hydrogenophilus thermoluteolus TH-1. J Biosci Bioeng. 127, 686–689. 2019
  6. T Narihiro, MK Nobu, T Hori, T Aoyagi, Y Sato, T Inaba, H Aizawa, H Tamaki, H Habe. Effects of the wastewater flow rate on interactions between the genus Nitrosomonas and diverse populations in an activated sludge microbiome. Microbes Environ. 34, 89–94. 2019
  7. YJ Zhao†, Y Sato†, T Inaba, T Aoyagi, T Hori, H Habe (†equal contribution). Activated sludge microbial communities of a chemical plant wastewater treatment facility with high-strength bromide ions and aromatic substances. J Gen Appl Microbiol. 65, 106–110. 2019
2018
  1. T Aoyagi, T Hamai, T Hori, Y Sato, M Kobayashi, Y Sato, T Inaba, A Ogata, H Habe, T Sakata. Microbial community analysis of sulfate-reducing passive bioreactor for treating acid mine drainage under failure conditions after long-term continuous operation. J Environ Chem Eng. 6, 5795–5800. 2020
  2. T Inaba, T Hori, H Aizawa, Y Sato, A Ogata, H Habe. Microbiomes and chemical components of feed water and membrane-attached biofilm in reverse osmosis system to treat membrane bioreactor effluents. Sci Rep. 8, 16805. 2018
  3. T Inaba†, Y Sato†, H Koike, T Hori, M Kanno, N Kimura, K Kirimura, H Habe (†equal contribution). Draft genome sequence of Pseudomonas citronelollis LA18T, a bacterium that use levulinic acid. Microbiol Resour Announc. 7, e00906-18. 2018
  4. H Itoh, T Hori, Y Sato, A Nagayama, K Tago, M Hayatsu, Y Kikuchi. Infection dynamics of insecticide-degrading symbionts from soil to insects in response to insecticide spraying. ISME J. 12, 909–920. 2018
  5. T Inaba, T Hori, Y Sato, T Aoyagi, D Hanajima,A Ogata, H Habe. Eukaryotic microbiomes of membrane-attached biofilms in membrane bioreactors analyzed by high-throughput sequencing and microscopic observations. Microbes Environ. 33, 98–101. 2018
2017
  1. T Aoyagi, T Hamai, T Hori, Y Sato, M Kobayashi, Y Sato, T Inaba, A Ogata, H Habe, T Sakai. Hydraulic retention time and pH affect the performance and microbial communities of passive bioreactor for treatment of acid mine drainage. AMB Express. 7,142. 2017
  2. T Aoyagi, H Koike, T Morita, Y Sato, H Habe, T Hori. Draft genome sequence of Geobacter pelophilus strain Dfr2, a ferric iron reducing bacterium. Genome Announcement. 5, e00537-17. 2017
  3. H Habe, S Kondo, Y Sato, T Hori, M Kanno, N Kimura, H Koike, K Kirimura. Electrodialytic separation of levulinic acid catalytically synthesized from woody biomass for use in microbial conversion. Biotechnol Prog. 33, 448–453. 2017
2016
  1. RR Navarro, T Hori, Y Sato, R Tanaka, A Ogata, H Habe. High susceptibility of aerobic microbiota in membrane bioreactor (MBR) sludge towards olive oil as revealed by high-throughput sequencing of 16S rRNA genes. J. Environ. Chem. Eng. 4, 4392–4399. 2016 *Selected as top 12 papers in 2016
  2. Y Sato, T Hori, H Habe, A Ogata. A preliminary diagnostic method for membrane fouling using extracellular proteins secreted in pilot-scale membrane bioreactors. J Environ Biotechnol. 16, 65–68. 2016
  3. Y Sato, H Koike, S Kondo, T Hori, M Kanno, N Kimura, T Morita, K Kirimura, H Habe, Draft genome sequence of Burkholderia stabilis LA20W, a trehalose producer that uses levulinic acid as a substrate. Genome Announc. 4, e00795-16. 2016
  4. Y Sato, T Hori, RR Navarro, R Naganawa, H Habe, A Ogata. Effects of organic-loading-rate reduction on sludge biomass and microbial community in a deteriorated pilot-scale membrane bioreactor. Microbes Environ. 31, 361–364. 2016
  5. Y Sato, T Hori, RR Navarro, H Habe, A Ogat. Functional maintenance and structural flexibility of microbial communities perturbed by simulated intense rainfall in a pilot-scale membrane bioreactor. Appl Microbiol Biotechnol. 100, 6447–6456. 2016
  6. Y Sato, T Hori, RR Navarro, H Habe, H Yanagishita, A Ogata. Fine-scale monitoring of shifts in microbial community composition after high organic loading in a pilot-scale membrane bioreactor. J Biosci Bioeng. 121, 550–556. 2016
2015
  1. Y Sato, T Hori, RR Navarro, H Habe, A Ogata. Effect of a microbiota activator on accumulated ammonium and microbial community structure in a pilot-scale membrane bioreactor. J Gen Appl Microbiol. 61, 132–8. 2015
  2. RR Navarro, T Aoyagi, M Kimura, H Itoh, Y Sato, Y Kikuchi, A Ogata, T Hori. High-resolution dynamics of microbial communities during dissimilatory selenate reduction in anoxic soil. Environ Sci Technol. 49, 7684–91. 2015
  3. K Tago, T Okubo, H Itoh, Y Kikuchi, T Hori, Y Sato, A Nagayama, K Hayashi, S Ikeda, M Hayatsu. Insecticide-degrading Burkholderia symbionts of stinkbug naturally occupy various environments of sugarcane fields in a southeast island of Japan. Microbes Environ. 30, 29–36. 2015
  4. T Aoyagi, S Hanada, H Itoh, Y Sato, A Ogata, MW Friedrich, Y Kikuchi, T Hori. Ultra-high-sensitivity stable-isotope probing of rRNA by high-throughput sequencing of isopycnic centrifugation gradients. Environ Microbiol Rep. 7, 282–7. 2015
2014
  1. K Tago, H Itoh, Y Kikuchi, T Hori, Y Sato, A Nagayama, T Okubo, RR Navarro, T Aoyagi, K Hayashi, M Hayatsu. A fine-scale phylogenetic analysis of free-living Burkholderia species in sugarcane field soil. Microbes Environ. 29, 434–7. 2014
  2. Y Sato, H Arai, Y Igarashi, M Ishii. Adaptation of Hydrogenobacter thermophilus toward oxidative stress triggered by high expression of alkyl hydroperoxide reductase. Biosci Biotechnol Biochem. 78, 1619–22. 2014
2012
  1. Y Sato, H Kanbe, H Miyano, Y Sambongi, H Arai, M Ishii, Y Igarashi. Transcriptome analyses of metabolic enzymes in thiosulfate- and hydrogen-grown Hydrogenobacter thermophilus cells. Biosci Biotechnol Biochem. 76, 1677–1681. 2012
  2. Y Sato, M Kameya, S Fushinobu, T Wakagi, H Arai, M Ishii, Y Igarashi. A novel enzymatic system against oxidative stress in the thermophilic hydrogen-oxidizing bacterium Hydrogenobacter thermophilus. PLoS One. 7, e34825. 2012
 
2011
  1. Y Sato, M Kameya, H Arai, M Ishii, Y Igarashi. Detecting weak protein-protein interactions by modified far-western blotting. J Biosci Bioeng. 12, 304–7. 2011

総説・解説文

  1. 佐藤由也、菊池義智 (2023)「害虫と共生細菌が織りなす相互協力的な農薬解毒メカニズムの解明」バイオサイエンスとインダストリー（バイオインダストリー協会誌），81-1，pp.43-45
  2. 佐藤由也、菊池義智 (2022)「害虫カメムシと共生細菌が協力して農薬を解毒－害虫が農薬抵抗性になる新たな仕組み－」農業（大日本農会誌）No. 1695, 29–39.
  3. Habe H, Sato Y, Aoyagi T, Inaba T, Hori T, Hamai T, Hayashi K, Kobayashi M, Sakata T, Sato N (2020) Design, application, and microbiome of sulfate-reducing bioreactors for treatment of mining-influenced water. Appl. Microbiol. Biotechnol. [IF=5.56] 104, 6893–6903.
  4. Habe H, Sato Y, Kirimura K (2020) Microbial and enzymatic conversion of levulinic acid, an alternative building block to fermentable sugars from cellulosic biomass. Appl. Microbiol. Biotechnol. [IF=5.56] 104, 7767–7775.
  5. 佐藤由也、堀知行、小池英明、羽部浩 (2020)「ごくわずかな硝化細菌が活性汚泥による重油分解の効率を左右する」バイオサイエンスとインダストリー（バイオインダストリー協会誌）Vol 78, 116–117.
  6. 佐藤由也、小池英明 (2018)「メタトランスクリプトーム解析：RNA-seqで環境を診る」生物工学会誌 Vol 96, 403–407.
  7. 佐藤由也、稲葉知大、青柳 智、堀 知行、羽部 浩 (2018)「食べる：捕食の関係が作り出す水処理技術の新たな展開」J. Environ. Biotechnol.（環境バイオテクノロジー学会誌）Vol 18, 21–26.
  8. 佐藤由也 (2015)「昆虫のプロバイオティクス」生物工学会誌 Vol 93, 349.
  9. 佐藤由也、新井博之、石井正治 (2013)「“電子の流れ”で代謝を読み解く －Hydrogenobacter thermophilus の新規peroxidaseの発見」、バイオサイエンスとインダストリー（バイオインダストリー協会誌） Vol 71, 308–313.

著書

  1. 野村暢彦ら監修、バイオフィルム革新的制御技術、NTS、2023年

受賞

  1. 文部科学省 令和6年度科学技術分野の文部科学大臣表彰 若手科学者賞（2024年）［佐藤由也］
  2. 日本農芸化学会 農芸化学奨励賞（2022年）［佐藤由也］
  3. 日本微生物生態学会 第35回大会優秀ポスター賞（2022年）［野本祐希、佐藤由也］
  4. 日本水環境学会 2021年度論文奨励賞（廣瀬賞）（2022年）［佐藤由也］
  5. 日本農芸化学会2022年度大会 トピックス賞（2022年）［佐藤由也］
  6. 日本微生物生態学会 第32回大会 Best Presentation Award（2018年）［佐藤由也］
  7. 日本農芸化学会 2015年度大会 トピックス賞（2015年）［佐藤由也］
  8. 東京大学大学院農学生命科学研究科 研究科長賞（2013年）［佐藤由也］
  9. 第 3 回 日本学術振興会 育志賞（2013年）［佐藤由也］
  10. 日本化学会 関東支部長賞（2006年）［佐藤由也］