| タイトル | マーモセット平均脳形状テンプレート |
|---|---|
| 説明 | A tissue-segmented, population-averaged standard template of the common marmoset brain. This template was created by using anatomical T1-weighted images from 22 adult marmosets with a high-resolution isotropic voxel size of (0.2 mm)3 at 7-Tesla and DARTEL algorithm in SPM8. |
| 掲載誌 | Hikishima
K, Quallo MM, Komaki Y, Yamada M, Kawai K, Momoshima
S, Okano HJ, Sasaki
E, Tamaoki N, Lemon RN, Iriki A, Okano H.
Population-averaged standard template
brain atlas for the common marmoset (Callithrix
jacchus). Neuroimage. 2011 Feb 14;54(4):2741-9. |
| ダウンロード | https://brainatlas.brain.riken.jp/marmoset/modules/xoonips/detail.php?id=004 |
| タイトル | ラット平均脳形状テンプレート |
|---|---|
| 説明 | The average signal intensity, stereotaxic templates and TPMs of rat brain are intended for SPM normalization and segmentation (including skull-stripping) of rat head MRI data. Ex-vivo T2WI (an isotropic resolution of 118μm) of Long Evans (n=4, male, 8wo) rat head were acquired and DARTEL in SPM8 was used for the creation of templates and TPMs. The bounding box (a three dimensional space) of templates encompassed the followings x, y, z dimensions (-18,18; -20, 7; -14, 6) and the origin was (0, 0, 0) in mm. The horizontal slice (z=0) passed through bregma and lambda (the flat-skull position) and the coronal slice (y=0) lay perpendicular to the horizontal plane and passes through the bregma, and the sagittal slice (x=0) was located at the median sagittal plane. The locations of bregma and lambda were determined from the image contrasts of T2WI and CT data. |
| 作成者 | Hikishima K, Setogawa S, Mizuma H, Cui Y, Kobayashi K, Onoe H |
| ダウンロード | https://www.nitrc.org/projects/tpm_rat |
| タイトル | マウス平均脳形状テンプレート |
|---|---|
| 説明 | The templates for in vivo mouse brain are intended for SPM normalization and segmentation (including skull-stripping). The population-averaged, stereotaxic, and tissue segmented template were created from in vivo T1WI (an isotropic resolution of 80μm) of C57Bl/6(n=30, male), BALB/cBy(n=10, male), C3H/He(n=10, male), and DBA/2 (n=10, male) mice. The voxel size of templates were multiplied by 10 to be able to use SPM directly. |
| 掲載誌 | Hikishima
K, Komaki Y, Seki F, Ohnishi Y, Okano HJ, Okano H. In
vivo microscopic voxel-based morphometry with a brain
template to characterize strain-specific structures in
the mouse brain. Sci Rep. 2017 Mar 7;7(1):85. |
| ダウンロード | https://www.nitrc.org/projects/tpm_mouse |
| 発行年月 | マーモセット胎生期脳発達MRIデータ |
|---|---|
| 説明 | High-resolution 3D MRI data of developing brain and movies of atlas reconstructed from MRI data. |
| 掲載誌 | Hikishima
K, Sawada K, Murayama AY, Komaki Y, Kawai K, Sato N,
Inoue T, Itoh T,
Momoshima S, Iriki A, Okano HJ, Sasaki E, Okano H. Atlas
of the developing brain
of the marmoset monkey constructed using magnetic
resonance histology. Neuroscience. 2013 Jan 29;230:102-13. |
| ダウンロード | https://www.ciea.or.jp/marmoset/development.htm |